BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017F12SP1|AL427197
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 873 0.0
3x_Contig871 401 e-111
>3x_Contig1606
Length = 11468
Score = 873 bits (440), Expect = 0.0
Identities = 440/440 (100%)
Strand = Plus / Minus
Query: 1 cgtacatacaatttcgagaatgaagatgattttattgaggatgataatggcgaggccgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgtacatacaatttcgagaatgaagatgattttattgaggatgataatggcgaggccgca 381
Query: 61 caatataagagaccaaaaactcatgttcaatcaattccttctttgacagctaatcatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caatataagagaccaaaaactcatgttcaatcaattccttctttgacagctaatcatgta 321
Query: 121 aatcatcgcagaatttaccaaccaccagctcaattccaataccgaccattttcaacaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatcatcgcagaatttaccaaccaccagctcaattccaataccgaccattttcaacaggc 261
Query: 181 gcgacacctttcgggaatagcgataaaagataccttactataaaccaactaggtcatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcgacacctttcgggaatagcgataaaagataccttactataaaccaactaggtcatgta 201
Query: 241 tggacaacaagaaatgaaggcggtagcaattctataacggtctcttttttcgatgttagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tggacaacaagaaatgaaggcggtagcaattctataacggtctcttttttcgatgttagt 141
Query: 301 cgattccgtgagtatcatttcgacgatttattcaaatatgacctttgttcactgaccgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cgattccgtgagtatcatttcgacgatttattcaaatatgacctttgttcactgaccgat 81
Query: 361 gaaggtatactattgggccagtcgaagatgggtcaaattcaatacaagccacatagtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gaaggtatactattgggccagtcgaagatgggtcaaattcaatacaagccacatagtccc 21
Query: 421 tctggagattcatggactaa 440
||||||||||||||||||||
Sbjct: 20 tctggagattcatggactaa 1
>3x_Contig871
Length = 4172
Score = 401 bits (202), Expect = e-111
Identities = 223/226 (98%), Gaps = 3/226 (1%)
Strand = Plus / Minus
Query: 736 cagccgggaaatgatgatgaagacattgaatttttaaaatacgatgatattttcaattca 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172 cagccgggaaatgatgatgaagacattgaatttttaaaatacgatgatattttcaattca 4113
Query: 796 ttcaaccccctaggtatcaaatccttattcttctcaagctttggtgatccgtgtatgttt 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4112 ttcaaccccctaggtatcaaatccttattcttctcaagctttggtgatccgtgtatgttt 4053
Query: 856 ggtcatgataatgttttgttaattctgtccaaatggagaagtggtagtgacgcgagatgg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4052 ggtcatgataatgttttgttaattctgtccaaatggagaagtggtagtgacgcgagatgg 3993
Query: 916 gta-ccatagttgata-caatttagaactttgg-agatgtcagggg 958
||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 3992 gtacccatagttgataccaatttagaactttggaagatgtcagggg 3947
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8235
Number of Sequences: 1807
Number of extensions: 8235
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)